From 5bcc51c59700968f8dad4359a133ab6a64f85f01 Mon Sep 17 00:00:00 2001
From: shivesh <s.p.mandalia@qmul.ac.uk>
Date: Mon, 26 Nov 2018 20:43:08 -0600
Subject: begin contour.py and rename some util files

---
 contour.py | 99 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 99 insertions(+)
 create mode 100755 contour.py

(limited to 'contour.py')

diff --git a/contour.py b/contour.py
new file mode 100755
index 0000000..b0f2b99
--- /dev/null
+++ b/contour.py
@@ -0,0 +1,99 @@
+#! /usr/bin/env python
+# author : S. Mandalia
+#          s.p.mandalia@qmul.ac.uk
+#
+# date   : November 26, 2018
+
+"""
+HESE flavour ratio contour
+"""
+
+from __future__ import absolute_import, division
+
+import os
+import argparse
+from functools import partial
+
+import numpy as np
+
+from utils import gf as gf_utils
+from utils import llh as llh_utils
+from utils import misc as misc_utils
+from utils import plot as plot_utils
+from utils.enums import ParamTag
+from utils.param import Param, ParamSet, get_paramsets
+
+
+def define_nuisance():
+    """Define the nuisance parameters."""
+    nuisance = []
+    tag = ParamTag.NUISANCE
+    nuisance.extend([
+        Param(name='convNorm',        value=1.,  seed=[0.5, 2. ], ranges=[0. , 50.], std=0.3,  tag=tag),
+        Param(name='promptNorm',      value=0.,  seed=[0. , 6. ], ranges=[0. , 50.], std=0.05, tag=tag),
+        Param(name='muonNorm',        value=1.,  seed=[0.1, 2. ], ranges=[0. , 50.], std=0.1,  tag=tag),
+        Param(name='astroNorm',       value=6.9, seed=[0.1, 10.], ranges=[0. , 50.], std=0.1,  tag=tag),
+        Param(name='astroDeltaGamma', value=2.5, seed=[1. , 3. ], ranges=[-5., 5. ], std=0.1,  tag=tag)
+    ])
+    return ParamSet(nuisance)
+
+
+def nuisance_argparse(parser):
+    nuisance = define_nuisance()
+    for parm in nuisance:
+        parser.add_argument(
+            '--'+parm.name, type=float, default=parm.value,
+            help=parm.name+' to inject'
+        )
+
+
+def parse_args(args=None):
+    """Parse command line arguments"""
+    parser = argparse.ArgumentParser(
+        description="BSM flavour ratio analysis",
+        formatter_class=misc_utils.SortingHelpFormatter,
+    )
+    parser.add_argument(
+        '--injected-ratio', type=float, nargs=3, default=[1, 1, 1],
+        help='Set the central value for the injected flavour ratio at IceCube'
+    )
+    parser.add_argument(
+        '--seed', type=misc_utils.seed_parse, default='25',
+        help='Set the random seed value'
+    )
+    parser.add_argument(
+        '--threads', type=misc_utils.thread_type, default='1',
+        help='Set the number of threads to use (int or "max")'
+    )
+    parser.add_argument(
+        '--outfile', type=str, default='./untitled',
+        help='Path to output results'
+    )
+    try:
+        gf_utils.gf_argparse(parser)
+    except: pass
+    llh_utils.likelihood_argparse(parser)
+    nuisance_argparse(parser)
+    if args is None: return parser.parse_args()
+    else: return parser.parse_args(args.split())
+
+
+def main():
+    args = parse_args()
+    misc_utils.print_args(args)
+
+    if args.seed is not None:
+        np.random.seed(args.seed)
+
+    asimov_paramset, llh_paramset = get_paramsets(args, define_nuisance())
+    print 'asimov_paramset', asimov_paramset
+    print 'llh_paramset', llh_paramset
+
+    print "DONE!"
+
+
+main.__doc__ = __doc__
+
+
+if __name__ == '__main__':
+    main()
-- 
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