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| author | shivesh <s.p.mandalia@qmul.ac.uk> | 2018-04-28 17:01:52 -0500 |
|---|---|---|
| committer | shivesh <s.p.mandalia@qmul.ac.uk> | 2018-04-28 17:01:52 -0500 |
| commit | c37932036698600c7b44d2ff15aac6784d201098 (patch) | |
| tree | 5b0425d812a9f39cce0f59a3a617b6e472c79f90 /submitter/mcmc_dag.py | |
| parent | 45e8e4fa58e0c04c16b3000152dd08f2f6f8926e (diff) | |
| download | GolemFlavor-c37932036698600c7b44d2ff15aac6784d201098.tar.gz GolemFlavor-c37932036698600c7b44d2ff15aac6784d201098.zip | |
Sat Apr 28 17:01:52 CDT 2018
Diffstat (limited to 'submitter/mcmc_dag.py')
| -rw-r--r-- | submitter/mcmc_dag.py | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/submitter/mcmc_dag.py b/submitter/mcmc_dag.py index 79f9b6d..2866887 100644 --- a/submitter/mcmc_dag.py +++ b/submitter/mcmc_dag.py @@ -9,9 +9,9 @@ full_scan_mfr = [ fix_sfr_mfr = [ (1, 1, 1, 1, 2, 0), - (1, 1, 1, 1, 0, 0), - (1, 1, 1, 0, 1, 0), - (1, 1, 1, 0, 0, 1), + # (1, 1, 1, 1, 0, 0), + # (1, 1, 1, 0, 1, 0), + # (1, 1, 1, 0, 0, 1), # (1, 1, 0, 1, 2, 0), # (1, 1, 0, 1, 0, 0), # (1, 1, 0, 0, 1, 0), @@ -26,10 +26,10 @@ GLOBAL_PARAMS = {} # MCMC GLOBAL_PARAMS.update(dict( run_mcmc = 'True', - burnin = 2500, - nsteps = 10000, + burnin = 250, + nsteps = 1000, nwalkers = 60, - seed = 'None', + seed = 25, mcmc_seed_type = 'uniform' )) @@ -90,9 +90,9 @@ with open(outfile, 'w') as f: f.write('VARS\tjob{0}\tsr0="{1}"\n'.format(job_number, frs[3])) f.write('VARS\tjob{0}\tsr1="{1}"\n'.format(job_number, frs[4])) f.write('VARS\tjob{0}\tsr2="{1}"\n'.format(job_number, frs[5])) - for key in GLOBAL_PARAMS.keys(): - f.write('VARS\tjob{0}\tmr0="{1}"\n'.format(job_number, GLOBAL_PARAMS[key])) - f.write('VARS\tjob{0}\toutfile="{1}"\n'.format(job_number, outfile)) + for key in GLOBAL_PARAMS.iterkeys(): + f.write('VARS\tjob{0}\t{1}="{2}"\n'.format(job_number, key, GLOBAL_PARAMS[key])) + f.write('VARS\tjob{0}\toutfile="{1}"\n'.format(job_number, outchains)) job_number += 1 for frs in full_scan_mfr: @@ -110,7 +110,7 @@ with open(outfile, 'w') as f: f.write('VARS\tjob{0}\tsr0="{1}"\n'.format(job_number, 0)) f.write('VARS\tjob{0}\tsr1="{1}"\n'.format(job_number, 0)) f.write('VARS\tjob{0}\tsr2="{1}"\n'.format(job_number, 0)) - for key in GLOBAL_PARAMS.keys(): - f.write('VARS\tjob{0}\tmr0="{1}"\n'.format(job_number, GLOBAL_PARAMS[key])) - f.write('VARS\tjob{0}\toutfile="{1}"\n'.format(job_number, outfile)) + for key in GLOBAL_PARAMS.iterkeys(): + f.write('VARS\tjob{0}\t{1}="{2}"\n'.format(job_number, key, GLOBAL_PARAMS[key])) + f.write('VARS\tjob{0}\toutfile="{1}"\n'.format(job_number, outchains)) job_number += 1 |