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# author : S. Mandalia
# s.p.mandalia@qmul.ac.uk
#
# date : March 17, 2018
"""
Misc functions for the BSM flavour ratio analysis
"""
from __future__ import absolute_import, division, print_function
import os
import errno
import multiprocessing
from fractions import gcd
import argparse
from operator import attrgetter
import numpy as np
from golemflavor.enums import str_enum
from golemflavor.enums import DataType, Likelihood, Texture
class SortingHelpFormatter(argparse.HelpFormatter):
"""Sort argparse help options alphabetically."""
def add_arguments(self, actions):
actions = sorted(actions, key=attrgetter('option_strings'))
super(SortingHelpFormatter, self).add_arguments(actions)
def solve_ratio(fr):
denominator = reduce(gcd, fr)
f = [int(x/denominator) for x in fr]
allow = (1, 2, 0)
if f[0] not in allow or f[1] not in allow or f[2] not in allow:
return '{0:.2f}_{1:.2f}_{2:.2f}'.format(fr[0], fr[1], fr[2])
else:
return '{0}_{1}_{2}'.format(f[0], f[1], f[2])
def gen_identifier(args):
f = '_DIM{0}'.format(args.dimension)
f += '_sfr_' + solve_ratio(args.source_ratio)
if args.data in [DataType.ASIMOV, DataType.REALISATION]:
f += '_mfr_' + solve_ratio(args.injected_ratio)
if args.texture is not Texture.NONE:
f += '_{0}'.format(str_enum(args.texture))
return f
def gen_outfile_name(args):
"""Generate a name for the output file based on the input args.
Parameters
----------
args : argparse
argparse object to print
"""
return args.outfile + gen_identifier(args)
def parse_bool(s):
"""Parse a string to a boolean.
Parameters
----------
s : str
String to parse
Returns
----------
bool
Examples
----------
>>> from misc import parse_bool
>>> print(parse_bool('true'))
True
"""
if s.lower() == 'true':
return True
elif s.lower() == 'false':
return False
else:
raise ValueError
def parse_enum(e):
return '{0}'.format(e).split('.')[1].lower()
def print_args(args):
"""Print the input arguments.
Parameters
----------
args : argparse
argparse object to print
"""
arg_vars = vars(args)
for key in sorted(arg_vars):
print('== {0:<25} = {1}'.format(key, arg_vars[key]))
def enum_parse(s, c):
return c[s.upper()]
def make_dir(outfile):
try:
os.makedirs(outfile[:-len(os.path.basename(outfile))])
except OSError as exc: # Python >2.5
if exc.errno == errno.EEXIST and os.path.isdir(outfile[:-len(os.path.basename(outfile))]):
pass
else:
raise
def remove_option(parser, arg):
for action in parser._actions:
if (vars(action)['option_strings']
and vars(action)['option_strings'][0] == arg) \
or vars(action)['dest'] == arg:
parser._remove_action(action)
for action in parser._action_groups:
vars_action = vars(action)
var_group_actions = vars_action['_group_actions']
for x in var_group_actions:
if x.dest == arg:
var_group_actions.remove(x)
return
def seed_parse(s):
if s.lower() == 'none':
return None
else:
return int(s)
def thread_type(t):
if t.lower() == 'max':
return multiprocessing.cpu_count()
else:
return int(t)
def thread_factors(t):
for x in reversed(range(int(np.ceil(np.sqrt(t)))+1)):
if t%x == 0:
return (x, int(t/x))
def centers(x):
return (x[:-1]+x[1:])*0.5
def get_units(dimension):
if dimension == 3: return r' / \:{\rm GeV}'
if dimension == 4: return r''
if dimension == 5: return r' / \:{\rm GeV}^{-1}'
if dimension == 6: return r' / \:{\rm GeV}^{-2}'
if dimension == 7: return r' / \:{\rm GeV}^{-3}'
if dimension == 8: return r' / \:{\rm GeV}^{-4}'
def calc_nbins(x):
n = (np.max(x) - np.min(x)) / (2 * len(x)**(-1./3) * (np.percentile(x, 75) - np.percentile(x, 25)))
return np.floor(n)
def calc_bins(x):
nbins = calc_nbins(x)
return np.linspace(np.min(x), np.max(x)+2, num=nbins+1)
def most_likely(arr):
"""Return the densest region given a 1D array of data."""
binning = calc_bins(arr)
harr = np.histogram(arr, binning)[0]
return centers(binning)[np.argmax(harr)]
def interval(arr, percentile=68.):
"""Returns the *percentile* shortest interval around the mode."""
center = most_likely(arr)
sarr = sorted(arr)
delta = np.abs(sarr - center)
curr_low = np.argmin(delta)
curr_up = curr_low
npoints = len(sarr)
while curr_up - curr_low < percentile/100.*npoints:
if curr_low == 0:
curr_up += 1
elif curr_up == npoints-1:
curr_low -= 1
elif sarr[curr_up]-sarr[curr_low-1] < sarr[curr_up+1]-sarr[curr_low]:
curr_low -= 1
elif sarr[curr_up]-sarr[curr_low-1] > sarr[curr_up+1]-sarr[curr_low]:
curr_up += 1
elif (curr_up - curr_low) % 2:
# they are equal so step half of the time up and down
curr_low -= 1
else:
curr_up += 1
return sarr[curr_low], center, sarr[curr_up]
def flat_angles_to_u(x):
"""Convert from angles to mixing elements."""
return abs(angles_to_u(x)).astype(np.float32).flatten().tolist()
def myround(x, base=2, up=False, down=False):
if up == down and up is True: assert 0
if up: return int(base * np.round(float(x)/base-0.5))
elif down: return int(base * np.round(float(x)/base+0.5))
else: int(base * np.round(float(x)/base))
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